miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48820726|gb|CO122039.1|CO122039 CAAGCCAAAACCCTAAACAATGGCAGCAGCTGCCGCCGCCGCTGCACGTCCTCTGGTCTCCGTCCAAACCATAGATTCTG
ACATGGCCACTGACTCCACCCAAACCGTCCCACTCGCCGATGTCATGAAAGCCTCGATCCGACCCGACATTGTCACCTTC
GTCCACGACAACATCTCCAAAAACCGCCGCCAACCCTATGCAGTCTCCAAACGCGCCGGTCACCAGACCTCTGCCGAATC
CTGGGGCACAGGCCGCGCTGTCTCTCGCATCCCCCGTGTTCCCGGCGGAGGTACTCACCGTGCTGGTCAAGGTGCTTTCG
GAAACATGTGTCGTGGAGGCCGCATGTTTGCTCCGACCAAGATTTGGCGCCGCTGGCACCGGAAAATCAACGTTAACCAG
AAGCGCTATGCCGTTGCTTCGGCGATCGCTGCCTCTGCCGTAACCTCCCTCGTCATGGCACGTGGCCACCGCATCGAGGC
CGTACCGGAGATGCCTCTGGTCATATCTAACGCCGTGGAGAGCGTTGAGAAAACCTCTGCCGCAATTAAGGTTTTGAAAC
AGGTTGGGGCATATCCCGACGTGGAAAAGGCTAAGGACAGCGTTGGAATCCGACCCGGGAAAGGGAAAATGAGAAACCGG
AGGTACATTTCCCGTAAAGGTCCATTGATTGTTTATGGAACAGAGGGGGCAAAGCTCGTTAAGGCCTTTCGTAACATTCC
TGGAGTCGAGGTTGCCAATGTAGAGAGACTTAATCTATTGAAACTCGCTCCTGGAGGACACCTTGGAAGGTTCATTATAT
GGACCAAATCGGCTTACGAGAAGCTGGATTCGATTTATGGGTC




Most similar to sp|Q9XF97|RL4_PRUAR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 OS=Prunus armeniaca
           GN=RPL4 PE=2 SV=1
          Length = 408

 Score =  449 bits (1154), Expect = e-125
 Identities = 215/265 (81%), Positives = 237/265 (89%)
 Frame = +2

Query: 47  RPLVSVQTIDSDMATDSTQTVPLADVMKASIRPDIVTFVHDNISKNRRQPYAVSKRAGHQ 226
           RPLV+VQ+++ DMATD TQTV L DVMKASIRPDIVTFVH NISKN RQPYAVSK+AGHQ
Sbjct: 9   RPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQ 68

Query: 227 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKR 406
           TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKR
Sbjct: 69  TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKR 128

Query: 407 YXXXXXXXXXXXXXXXMARGHRIEAVPEMPLVISNAVESVEKTSAAIKVLKQVGAYPDVE 586
           Y               +ARGH+IE VPE+PLV+S+++E VE+TSAA+KVLKQ+GAY D E
Sbjct: 129 YAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAE 188

Query: 587 KAKDSVGIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVERLNLLKL 766
           KAKDS  IRPGKGKMRNRRYI+RKGPLIVYGTEGAKLVKAFRNIPG+++ NVERLNLLKL
Sbjct: 189 KAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNLLKL 248

Query: 767 APGGHLGRFIIWTKSAYEKLDSIYG 841
           APGGHLGRF++WTKSA+EKLDSIYG
Sbjct: 249 APGGHLGRFVVWTKSAFEKLDSIYG 273